This should help
Hi all, I thought I would put together a complete “guide” if you will for a Pre-89 1UZ-FE swapped Supra.  This swap is gaining in popularity so I figured if we have a good platform to get wiring information it would help ease the process.  First I will list the Supra connectors, then a short description, and pin layout.  Then I will list the 1UZ-FE connectors, then a short description, and pin layout.  Finally I will give a “guide” to connecting the two to make a running vehicle.  This "guide" will be dynamic until otherwise said, so I will be updating this periodically as I gain information.
I used a EWD Book for a 1986.5 Supra (NA Only), and a EWD book for a 1994 SC (300 & 400), and 1997 SC (300 & 400).  1994-1997 SC3/400 from my understanding were transition years in wiring much like our Pre-89 to 89 to Post-89 Supra wiring.  So I have started with a 1994 EWD, I just recently picked up a 1997 EWD, and I plan to get a 1996 soon.  In my 87 I have a post 1996 (A transition year for the 1UZ) and I noticed a few extra wires on plug IJ1 that needed power but the 1994 book worked just fine.
Since there is so much information I will attempt to post in separate replies, Thanks for looking.
---------- Post added at 10:54 PM ---------- Previous post was at 10:52 PM ----------
Pre-89 NA Toyota Supra:
 
Interior:
-          B-1 – 22 Pins, Yellow in color
o   Pin 1 – Black-Yellow in color
§  From “Water VSV” to “Air Mix Control”
o   Pin 2 – Red-White in color
§  From “ECT ECU” to “ECU”
o   Pin 3 – Red in color
§  From “ECT ECU” to “ECU”
o   Pin 4 – Black in color
§  From “ECT ECU” to “ECU”
o   Pin 5 – Black-Red in color
§  From “Fuel Pump” to “Check Connector”
o   Pin 6 – Green in color
§  From “Circuit Open Relay” to “Air Flow Meter”
o   Pin 7 – Black-Light Blue in color
§  From “Circuit Open Relay” to “ECU” and “Starter” (A/T Only)
o   Pin 8 – Yellow in color
§  From “ECU” to “Fuel Pump Control Relay”
o   Pin 9 – Black-Red in color
§  From “EFI Main Relay” to “Circuit Open Relay”
o   Pin 10 – Empty
§  No pin
o   Pin 11 – White in color
§  From “A/T Indicator S/W” to “ECT ECU”
o   Pin 12 – Black-White in color
§  From “Starter Relay” to “Starter”
o   Pin 13 – Light Blue in color
§  From “AC Amplifier” to “ECU”
o   Pin 14 – Violet in color
§  From “TEMS ECU” to “Check Connector”
o   Pin 15 – Black-Yellow in color
§  From “Cruise Control Clutch S/W” to “ECU”
o   Pin 16 – Black-Orange in color
§  From “7.5A IGN Fuse” to “ECU”
o   Pin 17 – Black-Orange in color
§  From “Ignition S/W” to “Igniter” and “EFI Resistor”
o   Pin 18 – Yellow in color
§  From “Theft Horn” to “Integration Relay No.2”
o   Pin 19 – Red-Yellow in color
§  From “Headlight Relay” to “ECU”
o   Pin 20 – White-Light Blue in color
§  From “Super Monitor” to “ECU”
o   Pin 21 – Red-Green in color
§  From “Super Monitor” to “ECU”
o   Pin 22 – Brown in color
§  From “Super Monitor” to “Ground” on Intake Manifold
-          B-2  – 14 Pins, White in color
o   Pin 1 – Green in color
§  From “A/T” Indicator S/W” to “ECT ECU”
o   Pin 2 – Red-Green in color
§  From “ECT Solenoid” to “ECT ECU”
o   Pin 3 – Green-Yellow in color
§  From “ECT Solenoid” to “ECT ECU”
o   Pin 4 – Yellow in color
§  Dead Ends From Engine Harness to B-2
o   Pin 5 – Black in color
§  Dead Ends From Engine Harness to B-2
o   Pin 6 – Red in color
§  From “Cruise Control Computer” to “ECT ECU” and “ECU”
o   Pin 7 – Light Blue in color
§  From “A/T Indicator S/W” to “ECT ECU”
o   Pin 8 – Green-Black in color
§  From “ECT Solenoid” to “ECT ECU”
o   Pin 9 – Red-Light Blue in color
§  From “ECT Solenoid” to “ECT ECU”
o   Pin 10 – Red in color
§  Dead End
o   Pin 11 – Blue-Yellow in color
§  Dead End
o   Pin 12 – Red-Black in color
§  Dead End
o   Pin 13 – Yellow-Blue in color
§  From “ECT ECU” to “Comb. Meter (SPD Sensor)”
o   Pin 14 – Yellow-Black in color
§  From “Check Connector” to “ECT ECU”
-          M-1 – 10 Pins, Yellow in color
o   Pin 1 – Red-Black in color
§  From “Back Up S/W to “Back Up Lights”
o   Pin 2 – Yellow in color
§  From “7.5A Gauge Fuse” to “Back Up Lights”
o   Pin 3 – Pink in color (Engine Harness Side)
§  From “ECU” to “Comb. Meter (SPD Sensor)”
o   Pin 4 – Black in color
§  From “Igniter” to “Super Monitor”, “ECU”, and “Comb. Meter” (Tach signal)
o   Pin 5 – Empty
§  No Pin
o   Pin 6 – Brown in color
§  From “Comb. Meter” to “Ground (Intake Manifold)”
o   Pin 7 – Yellow-Black in color
§  From “Oil Pressure Sending Unit” to “Comb. Meter”
o   Pin 8 – Gray-Green in color
§  From “ECU” to “CEL (Check Engine Light)”
o   Pin 9 – Yellow-Green in color
§  From “Water Temp Sensor” to “Comb. Meter”
o   Pin 10 – Violet in color
§  From “Defogger Relay” to “ECU”
Engine Bay:
-          C-1 – 6 Pins, Yellow in color
o   Pin 1 – Black-Yellow in color
§  From “15A EFI Fuse” to “ECU”
o   Pin 2 – Black-Orange in color
§  From “ECU” to “EFI Main Relay”
o   Pin 3 – White in color
§  From “15A Haz-Horn Fuse” to “Theft Horn”
o   Pin 4 – Black-Red in color
§  From “EFI Main Relay” to “ECU”
o   Pin 5 – White-Black in color
§  From “AFM” to “Ground (Left Fender)”
o   Pin6  – Empty
§  No Pin
---------- Post added at 10:56 PM ---------- Previous post was at 10:54 PM ----------
1994 Lexus SC400:
 
Interior:
-          IJ1 – 14 Pins, Gray in color
o   Pin 1 – Green in color
§  From “FPECU” to “Check Connector”
o   Pin 2 – Red-Blue in color
§  From “10A HTR Fuse” to “Water VSV”
o   Pin 3 – Empty
§  No Pin? Confirm?
o   Pin 4 – White in color
§  From “25A Haz-Horn Fuse” to “Haz Horn”
o   Pin 5 –  Empty
§  No Pin? Confirm?
o   Pin 6 – Black-White in color
§  From “IGN S/W” to “Neutral Safety S/W”
o   Pin 7 – Empty
§  No Pin? Confirm?
o   Pin 8 – Pink in color
§  From “ECU” to “FPECU”
o   Pin 9 – Black-Orange in color
§  From “Haz-Horn” to “Theft ECU”
o   Pin 10 – Yellow in color
§  From “10A Gauge Fuse” to “Back Up S/W”
o   Pin 11 – Empty
§  No Pin? Confirm?
o   Pin 12 – Black-Red in color
§  From “EFI Main Relay” to “FPECU” and “Sub o2 Sensors”
o   Pin 13 – White-Black in color
§  From “Trac ECU” to “Ground”
o   Pin 14 – Red-Green in color
§  From “ECU” to “FPECU”
-          IJ2 – 17 Pins, Gray in color
o   Pin 1 – Red in color
§  From “Cruise CTRL ECU” to “ECU”
o   Pin 2 – White-Red in color
§  From “Cruise CTRL ECU” to “ECU”
o   Pin 3 – Pink in color
§  From “Comb. Meter” to “ECU”
o   Pin 4 – Green-Blue in color
§  From “Cruise CTRL ECU” to “ECU”
o   Pin 5 – Empty
§  No Pin? Confirm?
o   Pin 6 – Light Green-Black in color
§  From “Progressive Power Steering ECU” to “PPS Solenoid”
o   Pin 7 – Green-White in color
§  From “Stop Light S/W” to “ECU”
o   Pin 8 – Empty
§  No Pin? Confirm?
o   Pin 9 – Brown-Yellow in color
§  From Cruise “CTRL ECU” to “ECU”
o   Pin 10 – Empty
§  No Pin? Confirm?
o   Pin 11 – Black-Orange in color
§  From “7.5A IGN Fuse” to “ECU”
o   Pin 12 – Black-Red in color
§  From “15A ECU-IG Fuse” to “Trac ECU”
o   Pin 13 – Empty
§  No Pin? Confirm?
o   Pin 14 – Empty
§  No Pin? Confirm?
o   Pin 15 – Empty
§  No Pin? Confirm?
o   Pin 16 – Light Green-Red in color
§  From “PPS Solenoid” to “PPS ECU”
o   Pin 17 – Blue in color
§  From “ECU” to “Kick Down S/W”
-          IK1 – 23 Pin, Orange in color
o   Pin 1 – Brown in color
§  From “Left o2 Sub” to “Ground”
o   Pin 2 – Green – Yellow in color
§  From “ECU” to “Data Link Connector 2 (TDCL)”
o   Pin 3 – Gray-Yellow in color
§  From “ECU” to “TDCL”
o   Pin 4 – Light-Green-Red in color
§  From “ECU” to “TDCL”
o   Pin 5 – Green-Red in color
§  From “ECU” to “TDCL”
o   Pin 6 – Red in color
§  From “Speed Sensor” to “Comb. Meter”
o   Pin 7 – Blue-Red in color
§  From “Speed Sensor” to “Comb. Meter”
o   Pin 8 – Black in color
§  From “Igniter” to “Comb. Meter (Tach)”
o   Pin 9 – Yellow-Green in color
§  From “Water Temp Sensor” to “Comb. Meter”
o   Pin 10 – Pink-Black in color
§  From “Trac ECU” to “TDCL”
o   Pin 11 – Black-Red in color
§  From “Back Up Light S/W” to “Back Up Lights”
o   Pin 12 – Gray in color
§  From “P S/W” to “Comb. Meter”
o   Pin 13 – Blue in color
§  From “N S/W” to “Comb. Meter”
o   Pin 14 – Green-White in color
§  From “D S/W” to “Comb. Meter”
o   Pin 15 – Empty
§  No Pin? Confirm?
o   Pin 16 – Green in color
§  From “2 S/W” to “Comb. Meter”