A trans cooler is vital for a performance car with an a/t to prevent the trans oil from getting hot enough to break down.
If you are going to reuse another stock trans, you MUST get a trans cooler, and I would strongly suggest a trans oil temp gauge as well.
The BL trans is the cheapest alternative to getting a functional transmission that will bolt up easily and hold every bit of torque that you are making. Although, even in this case, a trans cooler is a must.
I have acquired damn near every forseeable part for my R154 swap. I am in the hole ~$2200 with a lot of work and some custom fabrication ahead of me. To have found a clutch to holds 500wtq, I would be in the hole $3-400 in excess of what I am now (my clutch holds 460 crank torque). Once I am up on stands for the surgery, I expect the car to be disabled for at least a month. Regardless, I think the BL trans is a much more cost effective option to my R154 swap.
Getting a Supra TT is neither easy nor cheap, but an automatic TT is definitely going to run you less money up front. It is very difficult to find a TT for under $15k in any semblance of good condition, regardless of mileage. Swapping a 1UZ into the Supra is no small task either...especially when the money to swap in a 250hp motor could make the stock 2JZ do over 400 to the wheels.
I would hate to see you part out your SC400, since you are such a vital member of the Lextreme community. In reality, a couple grand for a BL tranny is a small price to pay to keep your SC on the road since you have put so many parts on the car as is. I definitely think you would get more value from the car by swapping a BL tranny than parting it out.